Marker Maps

JSON files defining the cell-type hierarchy and markers.

Format

{
  "_marker_map_metadata": {
    "version": "1.0",
    "tissue": "my_tissue"
  },
  "Cell_Type": {
    "markers": ["Marker1", "Marker2"],
    "anti_markers": ["AntiMarker"],
    "subtypes": {
      "Subtype_A": {
        "markers": ["SubMarker1"]
      }
    }
  }
}

Fields

Field	Required	Description
markers	Yes	Positive markers
anti_markers	No	Negative markers
subtypes	No	Child cell types