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Consolidation Overview

The consolidation module finalizes cell-type annotations after iterative refinement, producing a single cell_type_final column with production-ready labels.

Module Architecture​

Decision Flow​

Features​

  • Single output column: cell_type_final with clean, production-ready labels
  • Orphan rescue: Detects cells with strong subtype markers but weak root markers
  • IEL rescue: Recovers intraepithelial lymphocytes from epithelial clusters
  • Label harmonization: Standardizes naming conventions across annotations