cluster

Run Leiden clustering.

Usage

celltype-refinery cluster [OPTIONS]

Options

Option	Type	Default	Description
--input	PATH	-	Input H5AD file
--resolution	FLOAT	0.6	Leiden resolution
--n-pcs	INT	30	Principal components
--neighbors-k	INT	15	k for k-NN
--use-gpu	FLAG	False	Use GPU
--out	PATH	-	Output directory